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Trace Archive Reports

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Incoming Data on 11-17-2006

This report provides cumulative trace accumulation (trace counts, total bases and Q20 bases). There are some depositions that will show 0 q20 bases. This is likely due to the center submitting ABI files and not providing quality calls separately.

The statistics below represents only data loaded during the last week. The accumulation is indicated with the '+' sign. To get full report, which includes organisms not received additions during the week, press the "Save" button at the top of the page.

Species Code Center Trace Type Code Number
of Traces		 Number
of Base Pairs		 Number of Base Pairs
with Qualities > 20		 %
ACYRTHOSIPHON PISUM BCM WGS 2,780,233
+127,711 		2,702,499,217
+146,221,112 		2,243,185,171
+115,851,033 		83.00
ANOLIS CAROLINENSIS WIBR WGS 20,825,776
+244,224 		18,301,337,603
+208,643,482 		13,536,331,213
+147,086,450 		73.96
ANOPHELES GAMBIAE WUGSC WGS 1,165,178
+822,931 		893,914,292
+625,831,017 		710,909,945
+502,015,471 		79.53
AOTUS NANCYMAAE NISC SHOTGUN 567,386
+48,299 		592,394,156
+49,767,180 		395,742,483
+33,602,083 		66.80
ATELERIX ALBIVENTRIS NISC SHOTGUN 891,005
+2,180 		905,992,273
+2,273,454 		607,067,502
+1,561,847 		67.01
BURKHOLDERIA PHYMATUM STM815 JGI WGS 114,817
+114,817 		96,764,645
+96,764,645 		81,967,294
+81,967,294 		84.71
BURKHOLDERIA PHYTOFIRMANS PSJN JGI WGS 108,483
+108,483 		91,721,202
+91,721,202 		79,005,260
+79,005,260 		86.14
CALLICEBUS MOLOCH NISC SHOTGUN 563,090
+3,248 		591,003,528
+3,394,257 		404,025,531
+2,263,229 		68.36
CANIS FAMILIARIS WIBR OTHER 7,422
+24 		6,542,432
+21,751 		2,509,754
+11,529 		38.36
CANIS FAMILIARIS WIBR PCR 4,198
+116 		3,627,038
+105,857 		1,146,591
+35,605 		31.61
CANIS FAMILIARIS WIBR PRIMERWALK 2,162
+50 		1,801,325
+40,372 		877,166
+14,415 		48.70
CANIS FAMILIARIS WIBR SHOTGUN 1,843,262
+9,077 		1,672,945,645
+7,976,202 		1,195,623,893
+6,155,149 		71.47
CANIS FAMILIARIS WIBR TRANSPOSON 243,949
+2,916 		212,175,300
+2,577,656 		156,025,024
+1,954,690 		73.54
CAVIA PORCELLUS NISC SHOTGUN 494,425
+2,111 		510,955,059
+2,182,648 		348,982,523
+1,410,309 		68.30
CERCOPITHECUS AETHIOPS NISC SHOTGUN 158,882
+2,037 		150,748,615
+2,099,528 		106,713,978
+1,435,649 		70.79
CHLOROFLEXUS AGGREGANS DSM 9485 JGI 454 683,597
+683,597 		73,522,067
+73,522,067 		67,649,928
+67,649,928 		92.01
CHLOROFLEXUS AGGREGANS DSM 9485 JGI WGS 60,393
+60,393 		60,331,141
+60,331,141 		37,645,085
+37,645,085 		62.40
COLOBUS GUEREZA NISC SHOTGUN 357,279
+51,569 		369,285,218
+53,242,452 		251,052,945
+35,766,535 		67.98
COMAMONAS TESTOSTERONI KF-1 JGI 454 1,031,680
+1,031,680 		105,596,394
+105,596,394 		94,960,695
+94,960,695 		89.93
COMAMONAS TESTOSTERONI KF-1 JGI WGS 91,036
+91,036 		76,791,215
+76,791,215 		65,322,823
+65,322,823 		85.07
COXIELLA BURNETII 'MSU GOAT Q177' TIGR_JCVIJTC PRIMERWALK 84
+84 		84,315
+84,315 		37,568
+37,568 		44.56
COXIELLA BURNETII 'MSU GOAT Q177' TIGR_JCVIJTC WGS 4,151
+4,151 		4,095,075
+4,095,075 		3,133,634
+3,133,634 		76.52
DIPODOMYS ORDII BCM WGS 167,318
+44,380 		158,209,512
+40,383,317 		130,732,895
+33,669,092 		82.63
ECHINOPS TELFAIRI NISC SHOTGUN 344,603
+34,841 		355,488,209
+36,170,074 		247,918,126
+24,913,799 		69.74
EQUUS CABALLUS BCCAGSC CLONEEND 4,765
+4,765 		5,897,704
+5,897,704 		3,962,569
+3,962,569 		67.19
FERVIDOBACTERIUM NODOSUM RT17-B1 JGI WGS 25,764
+25,764 		25,902,030
+25,902,030 		17,834,764
+17,834,764 		68.85
GALLUS GALLUS WUGSC PCR 3,740
+31 		2,850,376
+28,968 		1,426,495
+7,180 		50.05
GALLUS GALLUS WUGSC PRIMERWALK 122,591
+185 		98,559,042
+155,696 		66,153,082
+84,565 		67.12
GALLUS GALLUS WUGSC SHOTGUN 2,477,262
+31,293 		2,068,964,657
+23,578,911 		1,575,439,617
+18,068,337 		76.15
HOMO SAPIENS ABC WGS 14,203,278
+134,687 		10,509,403,755
+101,562,294 		7,549,534,210
+81,107,307 		71.84
HOMO SAPIENS BCCAGSC RT-PCR 37,671
+6,200 		40,516,196
+6,131,633 		31,361,595
+4,850,700 		77.41
HOMO SAPIENS WUGSC PCR 617,695
+205,910 		400,059,896
+137,052,393 		213,944,070
+67,170,404 		53.48
IXODES SCAPULARIS WIBR OTHER 48
+10 		40,063
+7,700 		17,222
+1,702 		42.99
IXODES SCAPULARIS WIBR PRIMERWALK 16
+8 		12,571
+5,626 		2,742
+1,046 		21.81
MACACA MULATTA BCM SHOTGUN 2,309,036
+26,278 		2,210,258,099
+23,396,568 		1,696,372,294
+19,426,563 		76.75
MACROPUS EUGENII NISC SHOTGUN 178,135
+596 		170,085,699
+597,322 		129,147,818
+382,919 		75.93
MAGNAPORTHE GRISEA WIBR TRANSPOSON 287,627
+800 		250,644,181
+684,930 		172,262,100
+525,552 		68.73
MICROCEBUS MURINUS NISC SHOTGUN 513,775
+2,617 		526,735,084
+2,702,219 		362,607,413
+1,820,579 		68.84
MICROCEBUS MURINUS WIBR WGS 10,384
+2,704 		9,153,160
+2,252,399 		6,931,062
+1,651,919 		75.72
MUNTIACUS REEVESI NISC SHOTGUN 108,041
+2,750 		112,262,238
+2,892,579 		77,423,594
+1,941,606 		68.97
MUS MUSCULUS BCCAGSC RT-PCR 14,070
+4,473 		15,603,921
+5,024,372 		12,400,260
+3,945,785 		79.47
MUS MUSCULUS WUGSC PCR 42,222
+31 		29,388,959
+27,587 		16,094,468
+12,274 		54.76
MUS MUSCULUS WUGSC PRIMERWALK 58,572
+3 		47,637,734
+2,762 		31,516,881
+2,227 		66.16
MUS MUSCULUS WUGSC SHOTGUN 18,933,728
+16,973 		15,001,423,288
+12,909,143 		11,322,526,562
+9,804,237 		75.48
MYCOSPHAERELLA FIJIENSIS CIRAD86 JGI WGS 861,500
+6,048 		833,780,681
+5,387,325 		585,646,593
+3,660,294 		70.24
NASONIA VITRIPENNIS BCM WGS 3,230,210
+637 		2,991,634,760
+571,676 		2,446,368,085
+474,467 		81.77
OCHOTONA PRINCEPS WIBR WGS 3,971,300
+1,090,071 		3,408,612,234
+949,393,187 		2,524,162,402
+692,034,222 		74.05
ORNITHORHYNCHUS ANATINUS NISC SHOTGUN 563,175
+15,068 		549,389,124
+15,320,025 		380,866,845
+10,322,820 		69.33
PAN TROGLODYTES WUGSC PCR 10,021
+45 		7,591,105
+40,929 		4,087,941
+15,870 		53.85
PAN TROGLODYTES WUGSC PRIMERWALK 67,654
+712 		56,730,150
+582,051 		35,438,776
+317,513 		62.47
PAN TROGLODYTES WUGSC SHOTGUN 7,536,861
+63,090 		6,248,109,381
+46,711,725 		4,666,499,488
+35,511,442 		74.69
PANTOEA STEWARTII BCM WGS 141,115
+1 		137,485,229
+724 		114,838,692
+240 		83.53
PERKINSUS MARINUS TIGR_JCVIJTC WGS 542,279
+542,279 		563,777,296
+563,777,296 		443,354,217
+443,354,217 		78.64
PSEUDOMONAS MENDOCINA YMP JGI WGS 91,578
+91,578 		80,633,281
+80,633,281 		61,581,340
+61,581,340 		76.37
RHINOLOPHUS FERRUMEQUINUM NISC SHOTGUN 837,430
+1,994 		850,104,840
+2,032,408 		597,402,125
+1,341,016 		70.27
ROSEIFLEXUS CASTENHOLZII DSM 13941 JGI WGS 60,674
+60,674 		58,834,622
+58,834,622 		40,579,734
+40,579,734 		68.97
SAIMIRI BOLIVIENSIS BOLIVIENSIS NISC SHOTGUN 121,585
+2,758 		123,668,695
+2,807,413 		86,482,813
+1,821,499 		69.93
SELAGINELLA MOELLENDORFFII JGI WGS 2,685,165
+7,680 		2,703,102,743
+6,591,546 		1,843,032,707
+4,905,485 		68.18
SERRATIA PROTEAMACULANS 568 JGI WGS 67,844
+67,844 		65,004,941
+65,004,941 		47,608,773
+47,608,773 		73.24
SHEWANELLA WOODYI ATCC 51908 JGI WGS 73,247
+73,247 		71,911,959
+71,911,959 		51,387,764
+51,387,764 		71.46
SOREX ARANEUS NISC SHOTGUN 711,773
+9,826 		725,020,554
+10,207,190 		501,142,919
+6,443,957 		69.12
SORGHUM BICOLOR JGI WGS 10,371,954
+389,870 		10,138,386,794
+401,912,048 		7,005,300,352
+252,908,022 		69.10
TURSIOPS TRUNCATUS BCM WGS 10,028,034
+493,582 		9,393,927,983
+443,216,211 		7,930,368,708
+374,889,810 		84.42
YERSINIA PSEUDOTUBERCULOSIS IP 31758 TIGR_JCVIJTC PRIMERWALK 1,399
+47 		1,412,901
+47,534 		957,365
+33,461 		67.76
YERSINIA PSEUDOTUBERCULOSIS IP 31758 TIGR_JCVIJTC WGS 56,492
+6 		57,199,150
+5,945 		48,825,043
+3,771 		85.36
ZEA MAYS WUGSC CLONEEND 456,342
+41,469 		382,349,802
+33,325,077 		248,250,856
+24,224,414 		64.93
ZEA MAYS WUGSC PCR 17,026
+292 		13,398,635
+246,494 		6,782,633
+99,832 		50.62
ZEA MAYS WUGSC PRIMERWALK 254,956
+1,859 		221,273,991
+1,526,498 		133,736,838
+852,675 		60.44
ZEA MAYS WUGSC SHOTGUN 7,025,941
+137,125 		5,689,004,857
+105,578,216 		4,282,424,173
+80,549,439 		75.28