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Trace Archive Reports

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Incoming Data on 10-14-2005

This report provides cumulative trace accumulation (trace counts, total bases and Q20 bases). There are some depositions that will show 0 q20 bases. This is likely due to the center submitting ABI files and not providing quality calls separately.

The statistics below represents only data loaded during the last week. The accumulation is indicated with the '+' sign. To get full report, which includes organisms not received additions during the week, press the "Save" button at the top of the page.

Species Code Center Trace Type Code Number
of Traces
Number
of Base Pairs
Number of Base Pairs
with Qualities > 20
%
AOTUS NANCYMAAE NISC SHOTGUN 84,682
+4,065
88,290,737
+4,098,898
60,083,469
+3,007,288
68.05
ATELERIX ALBIVENTRIS NISC SHOTGUN 271,533
+8,785
265,677,511
+8,804,922
179,722,852
+5,991,611
67.65
BACILLUS THURINGIENSIS SEROVAR KONKUKIAN STR. 97-2 JGI WGS 181,804
+181,387
153,763,310
+153,399,816
106,025,971
+105,837,307
68.95
BOS TAURUS BCM CLONEEND 14,670
+8,079
15,405,937
+8,415,152
11,364,034
+6,237,152
73.76
BOS TAURUS BCM SHOTGUN 5,772,469
+272,671
5,726,492,627
+268,171,868
4,644,347,159
+216,836,010
81.10
BOS TAURUS MARC PCR 18,458
+1,675
13,725,816
+1,347,217
9,080,131
+926,616
66.15
CAENORHABDITIS SP. 4 (CE-II) WUGSC CLONEEND 15,153
+13,984
12,360,255
+11,445,312
8,220,649
+7,576,806
66.51
CAENORHABDITIS SP. 4 (CE-II) WUGSC WGS 1,428,607
+947,833
1,034,650,481
+685,653,030
800,577,516
+531,283,792
77.38
CALLICEBUS MOLOCH NISC SHOTGUN 76,565
+2,859
77,607,372
+2,950,575
55,793,122
+2,054,715
71.89
CALLITHRIX JACCHUS BCM WGS 1,665,764
+536,792
1,637,268,192
+525,186,976
1,333,629,436
+428,359,507
81.45
CALLITHRIX JACCHUS NISC SHOTGUN 892,618
+3,366
910,368,620
+3,499,487
625,162,953
+2,259,962
68.67
CALLITHRIX JACCHUS WUGSC WGS 129,419
+126,912
99,798,358
+97,789,634
87,245,881
+85,720,973
87.42
CAVIA PORCELLUS WIBR OTHER 24
+4
21,983
+3,733
11,802
+1,641
53.69
CAVIA PORCELLUS WIBR PCR 24
+24
15,531
+15,531
9,368
+9,368
60.32
CAVIA PORCELLUS WIBR PRIMERWALK 36
+36
16,554
+16,554
9,128
+9,128
55.14
CAVIA PORCELLUS WIBR TRANSPOSON 2,560
+1,280
2,369,539
+1,200,509
1,754,282
+876,795
74.03
CAVIA PORCELLUS WIBR WGS 7,499,564
+95
6,617,358,173
+94,998
5,010,799,634
+70,097
75.72
COLOBUS GUEREZA NISC SHOTGUN 81,059
+1,385
83,334,752
+1,421,754
56,620,768
+1,048,682
67.94
CULEX PIPIENS QUINQUEFASCIATUS WIBR OTHER 24
+24
21,198
+21,198
5,057
+5,057
23.86
DASYPUS NOVEMCINCTUS NISC SHOTGUN 874,565
+4,124
885,344,727
+4,112,860
623,817,326
+3,033,625
70.46
DROSOPHILA PSEUDOOBSCURA BCM EST 34,926
+609
40,453,325
+714,788
22,919,443
+412,271
56.66
ECHINOPS TELFAIRI WIBR OTHER 20
+2
18,253
+1,922
11,761
+940
64.43
ECHINOPS TELFAIRI WIBR TRANSPOSON 320
+288
292,537
+262,925
237,492
+216,022
81.18
GASTEROSTEUS ACULEATUS WIBR WGS 6,955,924
+285
6,228,276,757
+267,934
4,272,245,544
+177,232
68.59
GORILLA GORILLA GORILLA NISC SHOTGUN 10,113
+3,109
10,333,464
+3,144,706
7,088,165
+2,072,434
68.59
HOMO SAPIENS ABC WGS 2,129,261
+331,583
1,505,136,031
+242,794,501
903,405,545
+151,232,047
60.02
HOMO SAPIENS CRA WGS 24,889,091
+206,794
20,075,853,560
+186,132,288
13,529,780,680
+116,742,751
67.39
HOMO SAPIENS IMBGA SHOTGUN 63,118
+63,118
69,313,829
+69,313,829
26,675,102
+26,675,102
38.48
HYDRA MAGNIPAPILLATA JCVIJTC WGS 7,164,002
+143,542
7,121,205,541
+141,693,348
5,591,654,078
+114,528,996
78.52
INFLUENZA A VIRUS (A/MEMPHIS/1/90(H3N2)) TIGR_JCVIJTC RT-PCR 124
+124
70,841
+70,841
59,839
+59,839
84.47
INFLUENZA A VIRUS (A/NEW YORK/228/2003(H1N1)) TIGR_JCVIJTC RT-PCR 264
+264
155,076
+155,076
103,049
+103,049
66.45
INFLUENZA A VIRUS (A/NEW YORK/291/2002(H1N1)) TIGR_JCVIJTC RT-PCR 236
+236
124,178
+124,178
84,102
+84,102
67.73
INFLUENZA A VIRUS (A/NEW YORK/302/2001(H1N1)) TIGR_JCVIJTC RT-PCR 146
+146
89,957
+89,957
54,080
+54,080
60.12
INFLUENZA A VIRUS (A/NEW YORK/342/2001(H1N1)) TIGR_JCVIJTC RT-PCR 139
+139
81,721
+81,721
53,995
+53,995
66.07
INFLUENZA A VIRUS (A/NEW YORK/346/2001(H1N1)) TIGR_JCVIJTC RT-PCR 231
+231
120,278
+120,278
86,583
+86,583
71.99
INFLUENZA A VIRUS (A/NEW YORK/354/2004(H3N2)) TIGR_JCVIJTC RT-PCR 180
+180
111,253
+111,253
79,066
+79,066
71.07
INFLUENZA A VIRUS (A/NEW YORK/389/2005(H3N2)) TIGR_JCVIJTC RT-PCR 119
+119
68,443
+68,443
52,449
+52,449
76.63
LEMUR CATTA NISC SHOTGUN 82,466
+2,108
70,640,548
+1,985,529
54,570,892
+1,520,757
77.25
LISTERIA MONOCYTOGENES WIBR WGS 23,578
+2,074
19,863,028
+1,412,438
12,655,860
+938,055
63.72
LOXODONTA AFRICANA NISC SHOTGUN 722,249
+11,671
738,634,413
+11,714,000
504,152,693
+8,293,672
68.25
MACACA MULATTA BCM SHOTGUN 1,040,188
+227,496
1,052,361,605
+232,429,189
748,198,560
+187,079,212
71.10
MACACA MULATTA NISC SHOTGUN 146,632
+3,963
129,945,661
+4,028,531
98,746,781
+2,727,179
75.99
MACROPUS EUGENII AGRF WGS 68,237
+40,359
61,879,507
+37,001,924
46,589,063
+26,535,812
75.29
MONODELPHIS DOMESTICA WIBR TRANSPOSON 4,736
+1,920
4,062,873
+1,766,085
2,875,213
+1,317,359
70.77
MUNTIACUS MUNTJAK VAGINALIS NISC SHOTGUN 90,595
+18,081
91,783,793
+18,454,619
65,208,346
+12,680,928
71.05
MUNTIACUS REEVESI NISC SHOTGUN 39,916
+12,275
40,733,330
+12,463,870
28,771,394
+9,072,536
70.63
MUS MUSCULUS BCM SHOTGUN 1,460,436
+20,541
1,362,276,482
+20,812,935
968,858,799
+16,294,548
71.12
MUS MUSCULUS PERLEGEN CHIP 32,509,000
+267,989
24,172,938,343
+210,085,497
12,889,891,865
+121,720,665
53.32
MUS MUSCULUS WIBR OTHER 70,904
+1,451
61,142,006
+1,217,932
23,255,828
+435,730
38.04
MUS MUSCULUS WIBR PCR 69,089
+7,109
55,107,327
+4,691,664
18,517,954
+2,141,181
33.60
MUS MUSCULUS WIBR PRIMERWALK 468,120
+17,361
328,467,997
+7,683,730
101,753,184
+3,928,551
30.98
MUS MUSCULUS WIBR SHOTGUN 25,972,956
+216,309
20,516,828,106
+191,678,529
13,671,699,887
+127,921,684
66.64
MUS MUSCULUS WIBR TRANSPOSON 2,077,258
+320,156
1,736,496,386
+255,554,315
1,109,969,117
+157,706,278
63.92
MUS MUSCULUS WUGSC PCR 26,818
+5,498
18,646,129
+3,708,277
10,056,645
+2,177,955
53.93
MUS MUSCULUS WUGSC PRIMERWALK 34,250
+4,577
27,619,801
+3,622,639
18,415,883
+2,463,138
66.68
MUS MUSCULUS WUGSC SHOTGUN 16,559,380
+226,378
13,095,458,521
+178,153,542
9,834,485,514
+147,663,152
75.10
MYOTIS LUCIFUGUS WIBR WGS 7,772,817
+2,216,931
6,939,971,426
+2,042,171,666
4,908,898,557
+1,472,359,093
70.73
NOMASCUS LEUCOGENYS LEUCOGENYS NISC SHOTGUN 31,316
+1,412
31,996,628
+1,361,195
21,578,884
+1,010,358
67.44
ORNITHORHYNCHUS ANATINUS WUGSC CLONEEND 305,073
+74,014
235,320,948
+58,046,349
168,457,121
+36,669,898
71.59
ORNITHORHYNCHUS ANATINUS WUGSC PCR 122
+55
88,159
+38,070
52,952
+24,234
60.06
ORNITHORHYNCHUS ANATINUS WUGSC PRIMERWALK 265
+172
214,080
+133,868
148,925
+96,075
69.57
ORNITHORHYNCHUS ANATINUS WUGSC SHOTGUN 316,096
+14,677
272,666,922
+10,374,973
202,039,431
+7,973,507
74.10
ORNITHORHYNCHUS ANATINUS WUGSC WGS 26,823,085
+20
20,311,419,041
+15,134
16,441,001,181
+12,790
80.94
ORYCTOLAGUS CUNICULUS NISC SHOTGUN 601,026
+12,282
603,984,124
+12,465,108
427,010,848
+8,774,258
70.70
ORYZA NIVARA AGI CLONEEND 106,124
+106,124
134,783,812
+134,783,812
69,561,609
+69,561,609
51.61
OTOLEMUR GARNETTII NISC SHOTGUN 1,098,630
+1,255
1,054,985,221
+1,225,318
799,043,200
+883,413
75.74
OXYTRICHA TRIFALLAX WUGSC SHOTGUN 44,819
+20,480
36,524,437
+16,617,148
28,409,407
+13,500,135
77.78
PAN TROGLODYTES NISC SHOTGUN 631,681
+2,461
493,533,600
+2,556,918
383,921,304
+1,723,885
77.79
PANTOEA STEWARTII BCM WGS 139,463
+895
135,852,218
+985,035
113,709,791
+725,321
83.70
PAPIO ANUBIS NISC SHOTGUN 916,998
+2,073
895,902,650
+2,096,497
616,487,129
+1,419,116
68.81
PHYSCOMITRELLA PATENS JGI WGS 5,420,461
+968,363
5,546,338,153
+999,470,772
3,803,381,239
+659,815,404
68.57
PONGO PYGMAEUS ABELII WUGSC WGS 10,737,946
+255,219
8,291,069,726
+190,447,419
6,686,759,806
+157,786,969
80.65
PONGO PYGMAEUS BCM WGS 10,546,875
+52,440
10,122,164,368
+50,385,997
8,412,914,048
+42,174,793
83.11
PRISTIONCHUS PACIFICUS WUGSC WGS 1,751,073
+196,037
1,314,637,864
+150,930,541
1,097,626,541
+130,368,807
83.49
RHINOLOPHUS FERRUMEQUINUM NISC SHOTGUN 704,202
+14,039
713,328,823
+14,048,932
502,921,204
+9,926,135
70.50
SAIMIRI BOLIVIENSIS BOLIVIENSIS NISC SHOTGUN 63,919
+587
64,602,773
+609,749
46,148,596
+429,828
71.43
SOREX ARANEUS NISC SHOTGUN 333,892
+61,890
337,056,405
+62,326,454
239,014,132
+42,405,310
70.91
SOREX ARANEUS WIBR TRANSPOSON 1,024
+128
939,728
+116,397
729,298
+87,441
77.61
SOREX ARANEUS WIBR WGS 8,799,403
+380
7,710,840,237
+334,255
5,448,784,973
+236,493
70.66
SPERMOPHILUS TRIDECEMLINEATUS WIBR WGS 852,970
+624,110
698,988,105
+538,748,711
466,196,692
+375,254,070
66.70
STRONGYLOCENTROTUS PURPURATUS BCM SHOTGUN 4,229,448
+12,545
3,986,215,582
+11,338,950
3,140,747,063
+9,484,337
78.79
TRIBOLIUM CASTANEUM BCM CLONEEND 11,503
+3,958
11,136,571
+3,717,085
8,566,477
+2,816,809
76.92
ZEA MAYS AGI CLONEEND 114,293
+114,293
129,085,212
+129,085,212
65,339,178
+65,339,178
50.62