NCBI SRA Toolkit
Please consult SRA Toolkit Documentation for help.
Below are the latest releases of various tools and release checksum file.
Compiled binaries of March 18, 2019, version 2.9.6 release:
Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.
Builds of Third Party Software Tools with SRA support ( NGS 2.9.6 release ):
- Genome Analysis Toolkit (GATK) version 3.6-6-ngs.2.9.2 - including direct support of SRA
- HISAT2 version 2.1.0-ngs.2.9.6 - graph-based alignment of next generation sequencing reads to a population of genomes with direct support of SRA, built for Linux 64 bit architecture