skip to main content

List of SRA Samples. 2109951 found.

/ 84399

# Accession Organism Title Attributes Links
1. ERS500113 Streptococcus agalactiae 209800983
collection_date: 2009
country: France
host: Human
isolation_source: Blood culture
strain: Child12-2
serotype: III
2. SRS598912 Caenorhabditis elegans seq-SDQ3166_LIN37_N2_LTemb_ChIP_Rep2
source_name: seq-SDQ3166_LIN37_N2_LTemb_ChIP_Rep2
strain: N2
developmental stage: Late Embryos
genotype: wild type
Sex: hermaphrodite

GEO Sample GSM1195398

63455

3. SRS598911 Caenorhabditis elegans seq-SDQ3166_LIN37_N2_LTemb_ChIP_Rep1
source_name: seq-SDQ3166_LIN37_N2_LTemb_ChIP_Rep1
strain: N2
developmental stage: Late Embryos
genotype: wild type
Sex: hermaphrodite

GEO Sample GSM1195397

63455

4. ERS011777 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 20040863
5. ERS011731 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 19961150
6. ERS011718 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 19910486
7. ERS011707 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 19942421
8. ERS011698 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 19933536
9. ERS011655 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 19971599
10. ERS011620 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 19944626
11. ERS011613 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 20000253
12. ERS011609 Salmonella enterica subsp. enterica serovar Typhimurium Sample from Salmonella enterica subsp. enterica serovar Typhimurium
STRAIN: 19921478
13. SRS1984463 respiratory tract metagenome 12
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2016-02-19
env_biome: human respiratory system
env_feature: sinus
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 31
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: 394delTT
host_height: 158
host_sex: male
host_subject_id: 1171
16S_copies: 237679.04
samp_collect_device: functional endoscopic sinus surgery
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: yes
polypoid_change: no
smoker: no
SNOT20_total: 58
sample_purulence: Yes
culture_pseudomonas_aeruginosa: positive
culture_staphylococcus_aureus: positive
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: positive
culture_burkholderia_cepacia: negative
culture_comments: MRSA
antibiotic_azithromycin: 0
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: Aztreonam neb
antibiotic_number: 1
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2016-01-13
fvc: 4.55
fvc_percent: 88
fev1: 2.18
fev1_percent: 57
fev1_fvc: 83
fev1_fe6: 83
fef_max_predicted: 9.2
fef_max_percent: 70
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 5.42
fif_max: not collected

374847

374847

14. SRS1984464 respiratory tract metagenome 12
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2016-02-19
env_biome: human respiratory system
env_feature: lung
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 31
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: 394delTT
host_height: 158
host_sex: male
host_subject_id: 1171
16S_copies: 4506.76
samp_collect_device: Sputocol
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: yes
polypoid_change: no
smoker: no
SNOT20_total: 58
sample_purulence: Yes
culture_pseudomonas_aeruginosa: not collected
culture_staphylococcus_aureus: not collected
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: not collected
culture_burkholderia_cepacia: not collected
culture_comments: no sputum culture data
antibiotic_azithromycin: 0
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: Aztreonam neb
antibiotic_number: 1
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2016-01-13
fvc: 4.55
fvc_percent: 88
fev1: 2.18
fev1_percent: 57
fev1_fvc: 83
fev1_fe6: 83
fef_max_predicted: 9.2
fef_max_percent: 70
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 5.42
fif_max: not collected

374847

374847

15. SRS1984465 respiratory tract metagenome 11
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-12-14
env_biome: human respiratory system
env_feature: sinus
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 34
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: DF508
host_height: 160
host_sex: female
host_subject_id: 1158
16S_copies: 4429.69
samp_collect_device: functional endoscopic sinus surgery
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: no
polypoid_change: no
smoker: no
SNOT20_total: 36
sample_purulence: Yes
culture_pseudomonas_aeruginosa: positive
culture_staphylococcus_aureus: positive
culture_coagulase_neg_staph: negative
culture_achromobacter_xylosoxidans: negative
culture_burkholderia_cepacia: negative
culture_comments: MRSA. 2 strains isolated Pseudomonas 2 strains isolated
antibiotic_azithromycin: 0
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 0
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-12-08
fvc: 3.62
fvc_percent: 72
fev1: 1.83
fev1_percent: 61
fev1_fvc: 83
fev1_fe6: 84
fef_max_predicted: 6.87
fef_max_percent: 90
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 3.41
fif_max: not collected

374847

374847

16. SRS1984466 respiratory tract metagenome 11
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-12-14
env_biome: human respiratory system
env_feature: lung
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 34
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: DF508
host_height: 160
host_sex: female
host_subject_id: 1158
16S_copies: 2775.78
samp_collect_device: Sputocol
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: no
polypoid_change: no
smoker: no
SNOT20_total: 36
sample_purulence: Yes
culture_pseudomonas_aeruginosa: not collected
culture_staphylococcus_aureus: not collected
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: not collected
culture_burkholderia_cepacia: not collected
culture_comments: no sputum culture data
antibiotic_azithromycin: 0
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 0
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-12-08
fvc: 3.62
fvc_percent: 72
fev1: 1.83
fev1_percent: 61
fev1_fvc: 83
fev1_fe6: 84
fef_max_predicted: 6.87
fef_max_percent: 90
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 3.41
fif_max: not collected

374847

374847

17. SRS1984467 respiratory tract metagenome 10
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-10-16
env_biome: human respiratory system
env_feature: sinus
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 41
host_disease: cystic fibrosis
host_genotype1: 1717-1G-7A
host_genotype2: 3849+10kbc-T1
host_height: 177.8
host_sex: male
host_subject_id: 1131
16S_copies: 22649.67
samp_collect_device: functional endoscopic sinus surgery
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: yes
polypoid_change: yes
smoker: no
SNOT20_total: 23
sample_purulence: No
culture_pseudomonas_aeruginosa: negative
culture_staphylococcus_aureus: negative
culture_coagulase_neg_staph: negative
culture_achromobacter_xylosoxidans: negative
culture_burkholderia_cepacia: positive
culture_comments: not applicable
antibiotic_azithromycin: 0
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 0
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-09-08
fvc: 5.1
fvc_percent: 77
fev1: 2.98
fev1_percent: 72
fev1_fvc: not collected
fev1_fe6: not collected
fef_max_predicted: 9.98
fef_max_percent: 85
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 9.35
fif_max: not collected

374847

374847

18. SRS1984468 respiratory tract metagenome 10
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-10-16
env_biome: human respiratory system
env_feature: lung
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 41
host_disease: cystic fibrosis
host_genotype1: 1717-1G-7A
host_genotype2: 3849+10kbc-T1
host_height: 177.8
host_sex: male
host_subject_id: 1131
16S_copies: 647242.1
samp_collect_device: Sputocol
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: yes
polypoid_change: yes
smoker: no
SNOT20_total: 23
sample_purulence: No
culture_pseudomonas_aeruginosa: not collected
culture_staphylococcus_aureus: not collected
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: not collected
culture_burkholderia_cepacia: positive
culture_comments: not applicable
antibiotic_azithromycin: 0
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 0
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-09-08
fvc: 5.1
fvc_percent: 77
fev1: 2.98
fev1_percent: 72
fev1_fvc: not collected
fev1_fe6: not collected
fef_max_predicted: 9.98
fef_max_percent: 85
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 9.35
fif_max: not collected

374847

374847

19. SRS1984469 respiratory tract metagenome 9
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-07-17
env_biome: human respiratory system
env_feature: sinus
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 32
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: DF508
host_height: not collected
host_sex: female
host_subject_id: 1102
16S_copies: 6330.25
samp_collect_device: functional endoscopic sinus surgery
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: yes
allergies: yes
GERD: no
Prior_FESS: yes
polyps: yes
polypoid_change: no
smoker: no
SNOT20_total: 34
sample_purulence: No
culture_pseudomonas_aeruginosa: positive
culture_staphylococcus_aureus: negative
culture_coagulase_neg_staph: positive
culture_achromobacter_xylosoxidans: negative
culture_burkholderia_cepacia: negative
culture_comments: 2 strains of pseudomonas from sinus
antibiotic_azithromycin: 1
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 1
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 1
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 1
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 4
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-07-16
fvc: 3.44
fvc_percent: 51
fev1: 0.91
fev1_percent: 31
fev1_fvc: 84
fev1_fe6: 85
fef_max_predicted: 6.6
fef_max_percent: 56
fef_25_75_predicted: 3.24
fef_25_75_percent: 10
fif_max_predicted: not collected
fif_max: not collected

374847

374847

20. SRS1984470 respiratory tract metagenome 9
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-07-17
env_biome: human respiratory system
env_feature: lung
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 32
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: DF508
host_height: not collected
host_sex: female
host_subject_id: 1102
16S_copies: 52010.11
samp_collect_device: Sputocol
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: yes
allergies: yes
GERD: no
Prior_FESS: yes
polyps: yes
polypoid_change: no
smoker: no
SNOT20_total: 34
sample_purulence: No
culture_pseudomonas_aeruginosa: positive
culture_staphylococcus_aureus: not collected
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: not collected
culture_burkholderia_cepacia: not collected
culture_comments: not applicable
antibiotic_azithromycin: 1
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 1
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 1
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 1
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 4
steroid_prednisone: 0
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-07-16
fvc: 3.44
fvc_percent: 51
fev1: 0.91
fev1_percent: 31
fev1_fvc: 84
fev1_fe6: 85
fef_max_predicted: 6.6
fef_max_percent: 56
fef_25_75_predicted: 3.24
fef_25_75_percent: 10
fif_max_predicted: not collected
fif_max: not collected

374847

374847

21. SRS1984471 respiratory tract metagenome 8
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-06-26
env_biome: human respiratory system
env_feature: sinus
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 26
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: 1717-1G>A
host_height: not collected
host_sex: female
host_subject_id: 1094
16S_copies: 10071.03
samp_collect_device: functional endoscopic sinus surgery
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: no
polypoid_change: yes
smoker: no
SNOT20_total: 59
sample_purulence: Yes
culture_pseudomonas_aeruginosa: positive
culture_staphylococcus_aureus: positive
culture_coagulase_neg_staph: negative
culture_achromobacter_xylosoxidans: negative
culture_burkholderia_cepacia: negative
culture_comments: not applicable
antibiotic_azithromycin: 1
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 1
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 2
steroid_prednisone: 1
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-06-16
fvc: 3.94
fvc_percent: 116
fev1: 3.32
fev1_percent: 98
fev1_fvc: 86
fev1_fe6: 86
fef_max_predicted: 7.1
fef_max_percent: 126
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 6.08
fif_max: not collected

374847

374847

22. SRS1984472 respiratory tract metagenome 8
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-06-26
env_biome: human respiratory system
env_feature: lung
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 26
host_disease: cystic fibrosis
host_genotype1: DF508
host_genotype2: 1717-1G>A
host_height: not collected
host_sex: female
host_subject_id: 1094
16S_copies: 1375347
samp_collect_device: Sputocol
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: no
polypoid_change: yes
smoker: no
SNOT20_total: 59
sample_purulence: Yes
culture_pseudomonas_aeruginosa: not collected
culture_staphylococcus_aureus: not collected
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: not collected
culture_burkholderia_cepacia: not collected
culture_comments: no sputum culture data
antibiotic_azithromycin: 1
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 0
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 1
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 2
steroid_prednisone: 1
steroid_fluticasone: 0
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2015-06-16
fvc: 3.94
fvc_percent: 116
fev1: 3.32
fev1_percent: 98
fev1_fvc: 86
fev1_fe6: 86
fef_max_predicted: 7.1
fef_max_percent: 126
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 6.08
fif_max: not collected

374847

374847

23. SRS1984473 respiratory tract metagenome 7
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-06-04
env_biome: human respiratory system
env_feature: sinus
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 19
host_disease: cystic fibrosis
host_genotype1: Unknown
host_genotype2: Unknown
host_height: not collected
host_sex: female
host_subject_id: 1087
16S_copies: 2184.09
samp_collect_device: functional endoscopic sinus surgery
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: no
polypoid_change: no
smoker: no
SNOT20_total: 50
sample_purulence: Yes
culture_pseudomonas_aeruginosa: not collected
culture_staphylococcus_aureus: not collected
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: not collected
culture_burkholderia_cepacia: not collected
culture_comments: no clinical cultures from surgery
antibiotic_azithromycin: 1
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 1
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 1
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: Vancomycin, Micafungin
antibiotic_number: 4
steroid_prednisone: 0
steroid_fluticasone: 1
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2014-11-24
fvc: 3.56
fvc_percent: 47
fev1: 3.16
fev1_percent: 37
fev1_fvc: 87
fev1_fe6: not collected
fef_max_predicted: 6.71
fef_max_percent: 60
fef_25_75_predicted: 3.68
fef_25_75_percent: 18
fif_max_predicted: 2.8
fif_max: not collected

374847

374847

24. SRS1984474 respiratory tract metagenome 7
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-06-04
env_biome: human respiratory system
env_feature: lung
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 19
host_disease: cystic fibrosis
host_genotype1: Unknown
host_genotype2: Unknown
host_height: not collected
host_sex: female
host_subject_id: 1087
16S_copies: 3235.2
samp_collect_device: Sputocol
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: no
GERD: no
Prior_FESS: yes
polyps: no
polypoid_change: no
smoker: no
SNOT20_total: 50
sample_purulence: Yes
culture_pseudomonas_aeruginosa: not collected
culture_staphylococcus_aureus: not collected
culture_coagulase_neg_staph: not collected
culture_achromobacter_xylosoxidans: not collected
culture_burkholderia_cepacia: not collected
culture_comments: no clinical cultures from surgery
antibiotic_azithromycin: 1
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 1
antibiotic_doxycycline: 0
antibiotic_gentamicin: 0
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 1
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: Vancomycin, Micafungin
antibiotic_number: 4
steroid_prednisone: 0
steroid_fluticasone: 1
medi_hypertonic_saline: 0
medi_steroid_irrigation: 0
medi_steroid_inhaled: 0
pft_date: 2014-11-24
fvc: 3.56
fvc_percent: 47
fev1: 3.16
fev1_percent: 37
fev1_fvc: 87
fev1_fe6: not collected
fef_max_predicted: 6.71
fef_max_percent: 60
fef_25_75_predicted: 3.68
fef_25_75_percent: 18
fif_max_predicted: 2.8
fif_max: not collected

374847

374847

25. SRS1984475 respiratory tract metagenome 6
strain: Bacteria
isolate: not applicable
cultivar: not applicable
ecotype: not applicable
collection_date: 2015-05-22
env_biome: human respiratory system
env_feature: sinus
env_material: mucus
geo_loc_name: USA: Minnesota: Minneapolis
host: Homo sapiens
isol_growth_condt: not applicable
lat_lon: 44.9740 N 93.2277 W
host_age: 26
host_disease: cystic fibrosis
host_genotype1: G551D
host_genotype2: 2789+5G>A
host_height: 188
host_sex: male
host_subject_id: 1085
16S_copies: 1531.16
samp_collect_device: functional endoscopic sinus surgery
samp_mat_process: MoBio Powersoil
samp_store_loc: 201601273
samp_store_temp: -80C
samp_vol_we_dna_ext: 0.3
asthma: no
allergies: yes
GERD: no
Prior_FESS: yes
polyps: yes
polypoid_change: no
smoker: no
SNOT20_total: 8
sample_purulence: Yes
culture_pseudomonas_aeruginosa: negative
culture_staphylococcus_aureus: positive
culture_coagulase_neg_staph: negative
culture_achromobacter_xylosoxidans: negative
culture_burkholderia_cepacia: negative
culture_comments: not applicable
antibiotic_azithromycin: 1
antibiotic_cayston: 0
antibiotic_colistin: 0
antibiotic_tobramycin: 1
antibiotic_doxycycline: 1
antibiotic_gentamicin: 1
antibiotic_levofloxacin: 0
antibiotic_ciprofloxacin: 0
antibiotic_meropenem: 0
antibiotic_zosyn: 0
antibiotic_bactrim: 0
antibiotic_clindamycin: 0
antibiotic_colymycin: 0
antibiotic_other: na
antibiotic_number: 4
steroid_prednisone: 1
steroid_fluticasone: 1
medi_hypertonic_saline: 0
medi_steroid_irrigation: 1
medi_steroid_inhaled: 0
pft_date: missing
fvc: 5.55
fvc_percent: 101
fev1: 4.86
fev1_percent: 105
fev1_fvc: 86
fev1_fe6: 86
fef_max_predicted: 10.25
fef_max_percent: 122
fef_25_75_predicted: not collected
fef_25_75_percent: not collected
fif_max_predicted: 8.9
fif_max: not collected

374847

374847

/ 84399