|Run||Spots||Bases||Size||GC content||Published||Access Type|
This run has 2 reads per spot:
|L=151, 100%||L=151, 100%|
Technical read Application Read L=4, 100% Length is 4, 100% spots contain this read ̅L=165, σ=92.8, 66% Average length is 165, standard deviation is 92.8, 66% spots contain this read
|PRJNA281204||SRP057196||A survey of human brain transcriptome diversity at the single cell level|
We used single cell RNA sequencing on 466 cells to capture the cellular complexity of the adult and fetal human brain at a whole transcriptome level. Healthy adult temporal lobe tissue was obtained from epileptic patients during temporal lobectomy for medically refractory seizures. We were able to classify individual cells into all of the major neuronal, glial, and vascular cell types in the brain. Overall design: Examination of cell types in healthy human brain samples.
You need SRA Toolkit to operate on SRA runs.
fastq-dump will dump reads in a number of "standard" fastq and fasta formats.
Read more at SRA Knowledge Base on how to download SRA data using command line utilities.
-- SRA team
- Unidentified reads: 9.03%
- Identified reads: 90.97%
|Archaea||Methanocaldococcus sp. FS406-22||species||0.0||43||4.3|
Segment sizes and K-mer selection
Can I get the software?
Yes. at github
How can I cite you?
No publication yet. We intend to post a preprint soon.