Drosophila melanogaster Variation

Identifiers: SRA: SRP050151
BioProject: PRJNA268111

Study Type: Whole Genome Sequencing

Abstract: Characterization of genetic variant in the Drosophila Global Diversity Panel

Center Project: Drosophila melanogaster

External Link: /pubmed:25673134

Related Files
Organism	Sample	File Name	Size	Updated
		GDL_CNVs.bed	22.7Mb	2016-02-17 17:32:28
		GDL_HetBlocks.bed	19.2kb	2015-01-28 14:50:29
		GDL_IBD_regions.bed	829 b	2015-01-28 14:50:30
		GDL_Indels.vcf	174.3Mb	2015-01-28 14:46:39
		GDL_SNPs.vcf	1.1Gb	2015-01-28 14:48:47
		GDL_uncallable_intervals.bed	2.9Mb	2015-01-28 14:50:31
Drosophila melanogaster	SAMN03203070	SRR1662283.pileup	27.5Mb	2016-02-10 05:38:19
Drosophila melanogaster	SAMN03203071	SRR1663528.pileup	28.0Mb	2016-02-10 05:38:05
Drosophila melanogaster	SAMN03203072	SRR1663529.pileup	28.4Mb	2016-02-10 05:38:04
Drosophila melanogaster	SAMN03203073	SRR1663530.pileup	27.6Mb	2016-02-10 05:37:56
Drosophila melanogaster	SAMN03203074	SRR1663531.pileup	28.2Mb	2016-02-10 05:37:54
Drosophila melanogaster	SAMN03203075	SRR1663532.pileup	27.6Mb	2016-02-10 05:37:34
Drosophila melanogaster	SAMN03203076	SRR1663533.pileup	25.4Mb	2016-02-10 05:38:13
Drosophila melanogaster	SAMN03203077	SRR1663534.pileup	26.5Mb	2016-02-10 05:37:59
Drosophila melanogaster	SAMN03203078	SRR1663535.pileup	26.6Mb	2016-02-10 05:37:25
Drosophila melanogaster	SAMN03203079	SRR1663536.pileup	26.5Mb	2016-02-10 05:37:40
Drosophila melanogaster	SAMN03203080	SRR1663537.pileup	26.1Mb	2016-02-10 05:37:35
Drosophila melanogaster	SAMN03203081	SRR1663538.pileup	25.8Mb	2016-02-10 05:37:08
Drosophila melanogaster	SAMN03203082	SRR1663539.pileup	26.5Mb	2016-02-10 05:37:32
Drosophila melanogaster	SAMN03203083	SRR1663540.pileup	26.7Mb	2016-02-10 05:38:09
Drosophila melanogaster	SAMN03203084	SRR1663541.pileup	21.8Mb	2016-02-10 05:37:42
Drosophila melanogaster	SAMN03203085	SRR1663542.pileup	27.9Mb	2016-02-10 05:38:36
Drosophila melanogaster	SAMN03203086	SRR1663543.pileup	27.3Mb	2016-02-10 05:38:13
Drosophila melanogaster	SAMN03203087	SRR1663544.pileup	27.4Mb	2016-02-10 05:37:47
Drosophila melanogaster	SAMN03203088	SRR1663545.pileup	24.4Mb	2016-02-10 05:37:17
Drosophila melanogaster	SAMN03203089	SRR1663546.pileup	21.7Mb	2016-02-10 05:36:48
Drosophila melanogaster	SAMN03203090	SRR1663547.pileup	26.5Mb	2016-02-10 05:37:31
Drosophila melanogaster	SAMN03203091	SRR1663548.pileup	27.9Mb	2016-02-10 05:37:43
Drosophila melanogaster	SAMN03203092	SRR1663549.pileup	20.7Mb	2016-02-10 05:37:13
Drosophila melanogaster	SAMN03203093	SRR1663550.pileup	27.9Mb	2016-02-10 05:35:35
Drosophila melanogaster	SAMN03203094	SRR1663551.pileup	27.1Mb	2016-02-10 05:35:09
Drosophila melanogaster	SAMN03203095	SRR1663552.pileup	27.8Mb	2016-02-10 05:35:17
Drosophila melanogaster	SAMN03203096	SRR1663553.pileup	27.0Mb	2016-02-10 05:35:10
Drosophila melanogaster	SAMN03203097	SRR1663554.pileup	22.0Mb	2016-02-10 05:34:29
Drosophila melanogaster	SAMN03203098	SRR1663555.pileup	27.4Mb	2016-02-10 05:34:58
Drosophila melanogaster	SAMN03203099	SRR1663556.pileup	25.2Mb	2016-02-10 05:36:58
Drosophila melanogaster	SAMN03203100	SRR1663557.pileup	24.6Mb	2016-02-10 05:39:02
Drosophila melanogaster	SAMN03203101	SRR1663558.pileup	24.9Mb	2016-02-10 05:34:39
Drosophila melanogaster	SAMN03203102	SRR1663559.pileup	25.2Mb	2016-02-10 05:36:08
Drosophila melanogaster	SAMN03203103	SRR1663560.pileup	26.6Mb	2016-02-10 05:34:21
Drosophila melanogaster	SAMN03203104	SRR1663561.pileup	24.3Mb	2016-02-10 05:34:12
Drosophila melanogaster	SAMN03203105	SRR1663562.pileup	25.3Mb	2016-02-10 05:34:22
Drosophila melanogaster	SAMN03203106	SRR1663563.pileup	24.4Mb	2016-02-10 05:34:01
Drosophila melanogaster	SAMN03203107	SRR1663564.pileup	24.3Mb	2016-02-10 05:34:08
Drosophila melanogaster	SAMN03203108	SRR1663565.pileup	25.7Mb	2016-02-10 05:34:44
Drosophila melanogaster	SAMN03203109	SRR1663566.pileup	26.5Mb	2016-02-10 05:34:15
Drosophila melanogaster	SAMN03203110	SRR1663567.pileup	25.2Mb	2016-02-10 05:33:54
Drosophila melanogaster	SAMN03203111	SRR1663568.pileup	22.7Mb	2016-02-10 05:33:23
Drosophila melanogaster	SAMN03203112	SRR1663569.pileup	25.6Mb	2016-02-10 05:34:30
Drosophila melanogaster	SAMN03203113	SRR1663570.pileup	23.1Mb	2016-02-10 05:34:01
Drosophila melanogaster	SAMN03203114	SRR1663571.pileup	26.1Mb	2016-02-10 05:37:20
Drosophila melanogaster	SAMN03203115	SRR1663572.pileup	25.1Mb	2016-02-10 05:32:23
Drosophila melanogaster	SAMN03203116	SRR1663573.pileup	24.3Mb	2016-02-10 05:32:29
Drosophila melanogaster	SAMN03203117	SRR1663574.pileup	24.2Mb	2016-02-10 05:32:51
Drosophila melanogaster	SAMN03203118	SRR1663575.pileup	24.6Mb	2016-02-10 05:32:25
Drosophila melanogaster	SAMN03203119	SRR1663576.pileup	24.9Mb	2016-02-10 05:32:49
Drosophila melanogaster	SAMN03203120	SRR1663577.pileup	23.5Mb	2016-02-10 05:31:35
Drosophila melanogaster	SAMN03203121	SRR1663578.pileup	23.4Mb	2016-02-10 05:31:47
Drosophila melanogaster	SAMN03203122	SRR1663579.pileup	24.0Mb	2016-02-10 05:31:44
Drosophila melanogaster	SAMN03203123	SRR1663580.pileup	24.2Mb	2016-02-10 05:32:11
Drosophila melanogaster	SAMN03203124	SRR1663581.pileup	25.7Mb	2016-02-10 05:32:32
Drosophila melanogaster	SAMN03203125	SRR1663582.pileup	23.0Mb	2016-02-10 05:31:56
Drosophila melanogaster	SAMN03203126	SRR1663583.pileup	26.0Mb	2016-02-10 05:32:22
Drosophila melanogaster	SAMN03203127	SRR1663584.pileup	25.2Mb	2016-02-10 05:32:21
Drosophila melanogaster	SAMN03203128	SRR1663585.pileup	25.4Mb	2016-02-10 05:32:06
Drosophila melanogaster	SAMN03203129	SRR1663586.pileup	25.9Mb	2016-02-10 05:32:17
Drosophila melanogaster	SAMN03203130	SRR1663587.pileup	24.1Mb	2016-02-10 05:29:27
Drosophila melanogaster	SAMN03203131	SRR1663588.pileup	22.4Mb	2016-02-10 05:28:56
Drosophila melanogaster	SAMN03203132	SRR1663589.pileup	24.5Mb	2016-02-10 05:29:16
Drosophila melanogaster	SAMN03203133	SRR1663590.pileup	24.0Mb	2016-02-10 05:29:35
Drosophila melanogaster	SAMN03203134	SRR1663591.pileup	25.7Mb	2016-02-10 05:29:35
Drosophila melanogaster	SAMN03203135	SRR1663592.pileup	25.6Mb	2016-02-10 05:29:40
Drosophila melanogaster	SAMN03203136	SRR1663593.pileup	24.8Mb	2016-02-10 05:29:10
Drosophila melanogaster	SAMN03203137	SRR1663594.pileup	25.6Mb	2016-02-10 05:29:51
Drosophila melanogaster	SAMN03203138	SRR1663595.pileup	25.3Mb	2016-02-10 05:30:28
Drosophila melanogaster	SAMN03203139	SRR1663596.pileup	23.3Mb	2016-02-10 05:28:40
Drosophila melanogaster	SAMN03203140	SRR1663597.pileup	23.8Mb	2016-02-10 05:29:11
Drosophila melanogaster	SAMN03203141	SRR1663598.pileup	25.6Mb	2016-02-10 05:30:57
Drosophila melanogaster	SAMN03203142	SRR1663599.pileup	26.5Mb	2016-02-10 05:29:15
Drosophila melanogaster	SAMN03203143	SRR1663600.pileup	25.6Mb	2016-02-10 05:29:40
Drosophila melanogaster	SAMN03203144	SRR1663601.pileup	27.4Mb	2016-02-10 05:27:50
Drosophila melanogaster	SAMN03203145	SRR1663602.pileup	25.6Mb	2016-02-10 05:27:13
Drosophila melanogaster	SAMN03203146	SRR1663603.pileup	27.0Mb	2016-02-10 05:27:32
Drosophila melanogaster	SAMN03203147	SRR1663604.pileup	27.2Mb	2016-02-10 05:27:16
Drosophila melanogaster	SAMN03203148	SRR1663605.pileup	27.1Mb	2016-02-10 05:27:06
Drosophila melanogaster	SAMN03203149	SRR1663606.pileup	26.6Mb	2016-02-10 05:29:23
Drosophila melanogaster	SAMN03203150	SRR1663607.pileup	25.4Mb	2016-02-10 05:24:00
Drosophila melanogaster	SAMN03203151	SRR1663608.pileup	26.0Mb	2016-02-10 05:24:29
Drosophila melanogaster	SAMN03203152	SRR1663609.pileup	26.3Mb	2016-02-10 05:23:44
Drosophila melanogaster	SAMN03203153	SRR1663610.pileup	25.1Mb	2016-02-10 05:24:58
Drosophila melanogaster	SAMN03203154	SRR1663611.pileup	26.5Mb	2016-02-10 05:24:53
Drosophila melanogaster	SAMN03203151	SRR1769729.pileup	31.2Mb	2016-02-10 02:15:13

Related SRA data

Experiments:: 86 ( 85 samples )

Runs:: 86 (187.3Gbp; 77.1Gb)

Additional objects:

File type	count
bam	86
variation calls	2