NCBI SRA Toolkit
Please consult SRA Toolkit Documentation for help.
Below are the latest releases of various tools and release checksum file.
Compiled binaries of March 14, 2017, version 2.8.2-1 release:
Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.
Builds of Third Party Software Tools with SRA support ( NGS 1.3.0 release ):
- Genome Analysis Toolkit (GATK) version 3.6-6-ngs.1.3.0 - including direct support of SRA
- HISAT2 version 2.0.6-ngs.1.3.0 - graph-based alignment of next generation sequencing reads to a population of genomes with direct support of SRA, built for Linux 64 bit architecture