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What can the filter be applied to?
  • Sequence substring: one of the biological reads for a spot should contain the substring
    String length limited to 29 characters in 4NA alphabet (includes IUPAC substitution codes) or 61 characters in 2NA alphabet (ACGT only). Search is case insensitive and strings may be combined with boolean operators & | ! (AND, OR, NOT)
    See "SRA nucleotide search expressions" for more details.
    Maximum size of Run to be search is 1.1G
  • Name of a spot you are looking for.
    Example: EXWA4RL02G9Z6H
  • Name of sample pool member, or "all" for all members.
    Example: M12_V2 will return all spots assigned to the sample pool member M12_V2 for experiment SRX014738.

Please note that the filter searches across read boundaries within each spot. Thus, pattern matches within technical reads and across paired-end data boundaries will also be returned.

Download Format

Accession # of bases # of spots Experiment
total filtered
SRR000021 82.8M 304.9k SRX000001
SRR000027 128.7M 471.0k SRX000001
SRR000034 125.2M 457.0k SRX000001
SRR000035 127.0M 463.0k SRX000001
SRR000045 99.6M 368.2k SRX000001
SRR000054 107.1M 392.8k SRX000001
SRR000059 109.9M 403.1k SRX000001
SRR000063 46.7M 172.6k SRX000001
SRR000065 125.7M 459.0k SRX000001
SRR000026 131.9M 480.8k SRX000001
SRR000014 144.4M 527.8k SRX000002
SRR000036 138.3M 505.5k SRX000002
SRR000030 124.9M 456.3k SRX000002
SRR000029 105.4M 387.5k SRX000002
SRR000023 128.3M 468.7k SRX000002
SRR000017 141.2M 515.6k SRX000002
SRR000004 78.1M 307.7k SRX000002
SRR000055 115.8M 425.0k SRX000002
SRR000053 70.4M 257.3k SRX000002
SRR000051 128.4M 471.5k SRX000002
SRR000040 130.3M 475.0k SRX000002
SRR000037 76.4M 283.0k SRX000002
SRR000043 169.0M 608.9k SRX000003
SRR000038 148.4M 529.8k SRX000003
SRR000020 103.4M 374.6k SRX000003
SRR000018 174.4M 626.6k SRX000003
SRR000007 175.3M 633.2k SRX000003
SRR000058 163.0M 586.6k SRX000003
SRR000057 21.2M 76.7k SRX000003
SRR000050 153.3M 547.3k SRX000003
SRR000048 177.6M 640.7k SRX000003
SRR000046 21.3M 79.0k SRX000003