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Whole genome sequencing of chicken gut anaerobes

Identifiers: SRA: SRP101913
BioProject: PRJNA377666
Study Type: 
Other
Abstract: A necessary step in the understanding a function of gut microbiota is to obtain gut anaerobes in pure cultures, sequence them completely, predict their characteristic features and use them in all downstream experiments. In this study we therefore cultured and sequenced isolates from chicken caecum among which we identified isolates belonging to 6 different phyla including Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, Verrucomicrobia, Elusimicrobia and Synergistetes.

Related SRA data

Experiments:
342 ( 331 samples )
Runs:
342 (265.2Gbp; 104.9Gb)
Additional objects:
File type count
fastq 668
assembly of undentified reads 154
nanopore 8
WGMLST signature 2
realign to de-novo assembly 2