HDAC8 mutations in Cornelia de Lange Syndrome affect the cohesin acetylation cycle
Identifiers: SRA: SRP011927
Submission: SRA051272 on 2012-03-24 05:17:00
Cornelia de Lange syndrome (CdLS) is a dominantly inherited congenital malformation disorder caused by mutations in the cohesin-loading protein NIPBL1,2 for nearly 60% of individuals with classical CdLS 3-5 and in the core cohesin components SMC1A (~5%) and SMC3 (<1%) for a smaller fraction of probands6,7. In humans, the multi-subunit complex cohesin is comprised of SMC1, SMC3, RAD21 and a STAG protein to form a ring structure proposed to encircle sister chromatids to mediate sister chromatid cohesion (SCC)8 as well as play key roles in gene regulation9. SMC3 is acetylated during S-phase to establish cohesiveness of chromatin-loaded cohesin10-13 and in yeast, HOS1, a class I histone deacetylase, deacetylates SMC3 during anaphase14-16. Here we report HDAC8 as the vertebrate SMC3 deacetylase and the identification of loss-of-function HDAC8 mutations in six CdLS probands. Loss of HDAC8 activity results in increased SMC3 acetylation (SMC3-ac) and inefficient dissolution of the “used” cohesin complex released from chromatin in both prophase and anaphase. While SMC3 with retained acetylation is loaded onto chromatin, ChIP-Seq analysis demonstrates decreased occupancy of cohesin localization sites to result in a consistent pattern of altered transcription seen in CdLS cell lines with either NIPBL or HDAC8 mutations.
For ChIP, we made Library using SOLiD5500Library construction kit.For RNA sample, we used SOLiD total RNA-Seq kit.
External Link: /pubmed:22885700