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Human Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: 454 Protocol Development - Clinical

Identifiers: SRA: SRP002440
BioProject: PRJNA48467
HMP-DACC: hmp_preproduction_clinical_pilot_study
Study Type: 
Metagenomics
Abstract: The set represents the pyrosequencing of 16S rRNA genes amplified from anonymized clinical stool samples, distributed to each of the four HMP sequencing centers. This pilot was conducted using a pre-production version of the 454 sequencing protocol which has since been deprecated. The main differences with the production protocol are: no use of barcodes, bi-directional sequencing, pools containing 3 different 16S windows (V1-V3, V3-V5, V6-V9). (Previously referred to as Pre-CEFoS Clinical Pilot)
Center Project: human metagenome
External Link: NIH HMP DACC

The SRA runs have been pre-filtered by NCBI to remove contaminating human sequence.

These data are available through the dbGaP authorized access system.


Related SRA data

Experiments:
5 ( 1 samples )
Runs:
18 (169.9Mbp; 358.0Mb)