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Detection of a deletion strongly associated with the fruit flat shape in peach.

Identifiers: SRA: ERP023798
BioProject: PRJEB21538
IRTA: ena-STUDY-IRTA-27-06-2017-11:03:17:247-141
Institut de recerca i tecnologies agroalimentaries: ena-STUDY-IRTA-27-06-2017-11:03:17:247-141
Study Type: 
Other
Abstract: This study reports a 10Kb deletion affecting the gene PRUPE.6G281100, 400 Kb upstream of UDP98-412, co-segregating with the trait. This gene is a leucine-rich repeat receptor-like kinase (LRR-RLK) orthologous to the Brassinosteroid insensitive 1-associated receptor kinase 1 (BAK1) group. PCR markers suitable for MAS confirmed its strong association with the trait in a collection of 246 cultivars. They were used to evaluate the DNA from a round fruit derived from a somatic mutation of the flat variety ‘UFO-4’, revealing that the mutation affected the flat associated allele (S).
Description: This study reports a 10Kb deletion affecting the gene PRUPE.6G281100, 400 Kb upstream of UDP98-412, co-segregating with the trait. This gene is a leucine-rich repeat receptor-like kinase (LRR-RLK) orthologous to the Brassinosteroid insensitive 1-associated receptor kinase 1 (BAK1) group. PCR markers suitable for MAS confirmed its strong association with the trait in a collection of 246 cultivars. They were used to evaluate the DNA from a round fruit derived from a somatic mutation of the flat variety ‘UFO-4’, revealing that the mutation affected the flat associated allele (S).

Related SRA data

Experiments:
10 ( 10 samples )
Runs:
10 (5.1Mbp; 3.3Mb)
Additional objects:
File type count
bam 20