|Run||Spots||Bases||Size||GC content||Published||Access Type|
This run has 2 reads per spot:
|L=101, 100%||L=101, 100%|
Technical read Application Read L=4, 100% Length is 4, 100% spots contain this read ̅L=165, σ=92.8, 66% Average length is 165, standard deviation is 92.8, 66% spots contain this read
|PRJNA36679||SRP000694||Genome sequencing of 192 inbred strains of Drosophila melanogaster to serve as a reference panel for the study of complex traits|
A resource of 192 inbred D. melanogaster lines created from a single natural population that have been both extensively sequenced and extensively phenotyped for quantitative traits. This resource will be a valuable tool for associating genotype to phenotype for quantitative traits.
You need SRA Toolkit to operate on SRA runs.
fastq-dump will dump reads in a number of "standard" fastq and fasta formats.
Read more at SRA Knowledge Base on how to download SRA data using command line utilities.
-- SRA team
- Aligned reads: 96.37% (Drosophila melanogaster)
- Unidentified reads: 1.96%
- Identified reads: 1.67%
|Bacteria||Acetobacter subgen. Acetobacter||subgenus||0.0||2,172||2.2|
Segment sizes and K-mer selection
Can I get the software?
Yes. at github
How can I cite you?
No publication yet. We intend to post a preprint soon.