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metagenomics of human oral microbiome (SRR8114030)

Run
Run Spots Bases Size GC Content Data Status Published
SRR8114030 9.6M 2.4G 995.7MB 53.7% Public 2019-03-26

Quality graph (bigger)(smaller)

841
Phred quality score

This run has variable number of reads per spot

Experiment
Experiment Library Name Platform Strategy Source Selection Layout Action
SRX4940482 M11.5-V1-saliva-metaG Illumina WGS METAGENOMIC RANDOM PAIRED
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Libraries were prepared using a dual barcoding system, and sequenced at 150bp paired-end on a Illumina HiSeq 4000 machine. Raw reads were quality trimmed and filtered against the human genome issue 19 to exclude host sequences using MOCAT2.
Biosample
Biosample Sample Description Organism Links
SAMN09837438 (SRS3984278) human oral metagenome bioproject/289586
Bioproject
Bioproject SRA Study Title
PRJNA289586 SRP072561 Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus
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Recent evidence from high-resolution molecular studies suggests links between microbial dysbiosis in the gastrointestinal tract and a number of complex chronic diseases including diabetes mellitus. The present study forms a pilot study for the larger Luxembourg-based Diabetes Multiplex Family Study (MUST). Within the pilot study, we investigate the interplay of the gastrointestinal microbiota, lifestyle and genetic background in an observational study of families with two or more individuals affected by type 1 diabetes mellitus. Faecal samples which have undergone comprehensive biomolecular extractions are currently analysed using a multi-omics approach. Anthropometric data, including demographics, medical history, health status, medication, and dietary habits of all study participants were collected and are integrated with molecular data.

Updated: Wed Dec 11 11:58:08 EST 2024
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