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HiSeq X Ten paired end sequencing (ERR3403276)

Run
Run Spots Bases Size GC Content Data Status Published
ERR3403276 887.4k 268.0M 105.8MB 55.2% Public 2019-06-29

Quality graph (bigger)(smaller)

041
Phred quality score

This run has 2 reads per spot:

L=151, 100% L=151, 100%
Legend
    Technical read
    Application Read
L=4, 100%   Length is 4, 100% spots contain this read
̅L=165, σ=92.8, 66%   Average length is 165, standard deviation is 92.8,
66% spots contain this read
Show 2 additional attributesHide attributes
ENA-FIRST-PUBLIC
2019-06-28
ENA-LAST-UPDATE
2019-06-28
Experiment
Experiment Library Name Platform Strategy Source Selection Layout Action
ERX3427041 DN520489N:E7 Illumina WGS GENOMIC RANDOM PAIRED
Show designHide design
Illumina sequencing of library DN520489N:E7, constructed from sample accession ERS2295847 for study accession ERP024601. This is part of an Illumina multiplexed sequencing run (25964_2). This submission includes reads tagged with the sequence TACCGAGC.
Biosample
Biosample Sample Description Organism
SAMEA104694464 (ERS2295847) Klebsiella grimontii
Bioproject
Bioproject SRA Study Title
PRJEB22252 ERP024601 Baby_Biome_Study_gastrointestinal_bacterial_genomes
Show abstractHide abstract

The study investigates how early microbe exposure and the developing immune system influence subsequent health and developmental outcomes. Culturing efforts coupled with whole genome sequencing of the gastrointestinal bacteria can address key questions that are computationally non-trivial using shotgun metagenomics alone. This comprehensive gut microbiota-derived bacterial genome collection provides the basis to improve the taxonomic classification resolution of metagenomic analysis, and to allow subsequent in vitro and in vivo experiments on host physiology and gut colonisation process. To get a broad and comprehensive coverage of the gut microbiota, we cultivated bacterial species from human faecal samples on different selectice agar media and broth. Samples are whole-genome sequenced on Illumina X10 150bp PE.

Updated: Wed Dec 11 11:58:08 EST 2024
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