Illumina HiSeq 2000 paired end sequencing; environmental samples (ERR1712102)
Run
Run | Spots | Bases | Size | GC Content | Data Status | Published |
---|---|---|---|---|---|---|
ERR1712102 | 52.4M | 9.6G | 6.6GB | 42.3% | Public | 2016-10-29 |
This run has 2 reads per spot:
̅L=93, σ=15.9, 100% | ̅L=91, σ=17.7, 100% |
Experiment
Experiment | Library Name | Platform | Strategy | Source | Selection | Layout | Action |
---|---|---|---|---|---|---|---|
ERX1782181 | ARC_ADSAOSW_r1 | Illumina | RNA-Seq | METATRANSCRIPTOMIC | cDNA | PAIRED |
Biosample
Biosample | Sample Description | Organism |
---|---|---|
SAMEA2657032 (ERS492909) | This sample (TARA_N000002024) was collected during the Tara Oceans expedition (2009-2013) at station TARA_125 (latitudeN=-8.894, longitudeE=-142.631) on date/time=2011-08-08T21:50, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (20-180 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics analysis. This sample has replicate sample(s): TARA_N000002023. | marine metagenome |
Bioproject
Bioproject | SRA Study | Title |
---|---|---|
PRJEB6609 | ERP006156 | Metatranscriptome sequencing from samples corresponding to size fractions for protists. |
Abstract:
Metatranscriptome sequencing from different depths to retain small and large cell size (Protists Organisms). The RNA was extracted and submitted to high throughput sequencing.