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Illumina HiSeq 2000 paired end sequencing; environmental samples (ERR1712102)

Run
Run Spots Bases Size GC Content Data Status Published
ERR1712102 52.4M 9.6G 6.6GB 42.3% Public 2016-10-29

Quality graph (bigger)(smaller)

241
Phred quality score

This run has 2 reads per spot:

̅L=93, σ=15.9, 100% ̅L=91, σ=17.7, 100%
Legend
    Technical read
    Application Read
L=4, 100%   Length is 4, 100% spots contain this read
̅L=165, σ=92.8, 66%   Average length is 165, standard deviation is 92.8,
66% spots contain this read
Show 2 additional attributesHide attributes
ENA-FIRST-PUBLIC
2016-10-28
ENA-LAST-UPDATE
2018-11-16
Experiment
Experiment Library Name Platform Strategy Source Selection Layout Action
ERX1782181 ARC_ADSAOSW_r1 Illumina RNA-Seq METATRANSCRIPTOMIC cDNA PAIRED
Biosample
Biosample Sample Description Organism
SAMEA2657032 (ERS492909) This sample (TARA_N000002024) was collected during the Tara Oceans expedition (2009-2013) at station TARA_125 (latitudeN=-8.894, longitudeE=-142.631) on date/time=2011-08-08T21:50, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The sample was size-fractionated (20-180 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics analysis. This sample has replicate sample(s): TARA_N000002023. marine metagenome
Bioproject
Bioproject SRA Study Title
PRJEB6609 ERP006156 Metatranscriptome sequencing from samples corresponding to size fractions for protists.
Abstract:

Metatranscriptome sequencing from different depths to retain small and large cell size (Protists Organisms). The RNA was extracted and submitted to high throughput sequencing.

Updated: Wed Dec 11 11:58:08 EST 2024
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