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List of SRA Samples. 554900 found.

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# Accession Organism Title Attributes Links
1. SRS572264 Homo sapiens sgRNA4
source_name: Human Embryonic Kidney
cell line: HEK 293T
passage: 17-21
chip antibody: HA(abcam #9110)

GEO Sample GSM1347969

241244

2. SRS572263 Homo sapiens sgRNA3-replica2
source_name: Human Embryonic Kidney
cell line: HEK 293T
passage: 17-21
chip antibody: HA(abcam #9110)

GEO Sample GSM1347968

241244

3. SRS562249 Homo sapiens CTCF_ChIP-seq
source_name: THP-1 CTCF ChIPseq
cell line: THP-1
cell type: monocytic cell
genotype: MLL-AF9
chip antibody: CTCF : 07-729 Millipore Lot. DAM1745366

GEO Sample GSM1335528

239517

239520

4. SRS559076 Homo sapiens Treated AZA BS-seq Rep1
source_name: AML3
cell line: AML3
treatment: Aza

GEO Sample GSM1329865

242393

242396

5. SRS559079 Homo sapiens Untreated AZA BS-seq Rep2
source_name: AML3
cell line: AML3
treatment: untreated

GEO Sample GSM1329868

242393

242396

6. SRS559077 Homo sapiens Treated AZA BS-seq Rep2
source_name: AML3
cell line: AML3
treatment: Aza

GEO Sample GSM1329866

242393

242396

7. SRS559078 Homo sapiens Untreated AZA BS-seq Rep1
source_name: AML3
cell line: AML3
treatment: untreated

GEO Sample GSM1329867

242393

242396

8. SRS482104 Mus musculus C646_K27ac
source_name: E14 ES cells
background strain: 129/Ola
cell type: embryonic stem cells
genotype/variation: wild type

GEO Sample GSM1234533

219508

9. SRS479191 Mus musculus IV_MNase
source_name: In vitro reconstituted chromatin (genomic DNA from primary bone marrow-derived macrophages)
strain: C57BL/6
cell type: BMDM cells (7th day of differentiation)

GEO Sample GSM1228688

218857

10. SRS479190 Mus musculus BMDM_UT_shPu.1_rep2
source_name: Primary bone marrow-derived macrophages (BMDM)
strain: C57BL/6
cell type: BMDM cells (7th day of differentiation)
retroviral infection: shPu.1

GEO Sample GSM1228687

218857

11. SRS466020 Mus musculus MED1 ChIP-seq, 3T3-L1 Day7 1h Rosi
source_name: 3T3-L1 adipocytes (Day 7)
cell type: 3T3-L1 adipocytes
chip antibody: anti-MED1 (sc-8998; Santa Cruz)
treatment: 1 μM rosiglitazone / 0.1% DMSO for 1 hour

GEO Sample GSM1199133

213884

12. SRS466023 Mus musculus RNAPII ChIP-seq, 3T3-L1 Day7 1h DMSO rep1
source_name: 3T3-L1 adipocytes (Day 7)
cell type: 3T3-L1 adipocytes
chip antibody: anti-RNAPII (AC-055-100; Diagenode)
treatment: 0.1% DMSO (Vehicle) for 1 hour

GEO Sample GSM1199136

213884

13. SRS466022 Mus musculus C/EBPα ChIP-seq, 3T3-L1 Day7 1h DMSO
source_name: 3T3-L1 adipocytes (Day 7)
cell type: 3T3-L1 adipocytes
chip antibody: anti-C/EBPα (sc-61; Santa Cruz)
treatment: 0.1% DMSO (Vehicle) for 1 hour

GEO Sample GSM1199134

213884

14. SRS466021 Mus musculus C/EBPα ChIP-seq, 3T3-L1 Day7 1h Rosi
source_name: 3T3-L1 adipocytes (Day 7)
cell type: 3T3-L1 adipocytes
chip antibody: anti-C/EBPα (sc-61; Santa Cruz)
treatment: 1 μM rosiglitazone / 0.1% DMSO for 1 hour

GEO Sample GSM1199135

213884

15. SRS449804 Mus musculus shMLL2_RNAseq_rep1
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
transfection: shMLL2

GEO Sample GSM1171635

209089

16. SRS449806 Mus musculus shMLL2_RNAseq_rep2
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
transfection: shMLL2

GEO Sample GSM1171637

209089

17. SRS449805 Mus musculus shGFP_RNAseq_rep2
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
transfection: shGFP

GEO Sample GSM1171636

209089

18. SRS449801 Mus musculus shMLL3_H3K4me3
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
antibody: (rb) α-H3K4me3 (#528; Ali Shilatifard)
transfection: shMLL3

GEO Sample GSM1171632

209089

19. SRS449803 Mus musculus shGFP_RNAseq_rep1
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
transfection: shGFP

GEO Sample GSM1171634

209089

20. SRS449802 Mus musculus shMLL3_input
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
antibody: none
transfection: shMLL3

GEO Sample GSM1171633

209089

21. SRS449798 Mus musculus shGFP_Input
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
antibody: none
transfection: shGFP

GEO Sample GSM1171629

209089

22. SRS449800 Mus musculus shMLL2_input
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
antibody: none
transfection: shMLL2

GEO Sample GSM1171631

209089

23. SRS449797 Mus musculus shGFP_H3K4me3
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
antibody: (rb) α-H3K4me3 (#528; Ali Shilatifard)
transfection: shGFP

GEO Sample GSM1171628

209089

24. SRS449799 Mus musculus shMLL2_H3K4me3
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
antibody: (rb) α-H3K4me3 (#528; Ali Shilatifard)
transfection: shMLL2

GEO Sample GSM1171630

209089

25. SRS449796 Mus musculus shGFP_Input_rep2
source_name: ES cell culture
strain: V6.5
cell type: mouse embryonic stem cell
antibody: none
transfection: shGFP

GEO Sample GSM1171627

209089

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