Run Browser : Browse : Sequence Read Archive : NCBI/NLM/NIH

The purpose of this project is to sequence the transcriptome of the reference chimpanzee, Clint. This information will be used to improve the annotations of the chimpanzee genome.

Run	Spots	Bases	Size	Published	Access Type
SRR544870	43.9 M	8.9 G	5.9 Gbp	2012-09-05	public

Experiment	Platform	Library Name	Strategy	Source	Selection	Layout
SRX179267	Illumina		RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED

Biosample	Sample name	Title
SRS358653	Clint_Fibroblast	Chimpanzee (Clint), Untransformed Fibroblast Cell Line mRNA Seq

Bioproject	SRA Study	Title
PRJNA173089	SRP014910	Pan troglodytes Transcriptome or Gene expression

Object
RunSRR544870	HTTP	FTP	Aspera
ExperimentSRX179267	HTTP	FTP	Aspera
StudySRP014910	HTTP	FTP	Aspera

Filter:

What does it do?: This button will lead you to the page where you can subset the data using "Filter" field and download the results in FASTQ or FASTA format.

What can the filter be applied to?

Sequence substring: one of the biological reads for a spot should contain the substring
Examples: ATTGGA, ^ATTGGA, ATTGGA$, ATGDNNAT, ATGGA&GCGC
The strings are case insensitive, and belong to either 2NA or 4NA alphabets.
String length limited to 29 characters in 4NA alphabet (includes IUPAC substitution codes) or 61 characters in 2NA alphabet (ACGT only). Search is case insensitive and strings may be combined with boolean operators & | ! (AND, OR, NOT)
See "SRA nucleotide search expressions" for more details.
Name of a spot you are looking for.
Example: EXWA4RL02G9Z6H
Name of sample pool member, or "all" for all members.
Example: M22_V2 will return all spots assigned to the sample pool member M22_V2 for run SRR031989.
Spot Id.
Example: 23

Run SRR544870 (mRNA Sequencing of Chimpanzee (Clint), Untransformed Fibroblast Cell Line)

Intensity graph

	View: reads(customize)intensity graphsignals Hide base space color space show separated reads biological reads technical reads show quality scorewith bases show clipped show 4 channel quality scorewith bases
	Intensity graph