Run Browser : Browse : Sequence Read Archive : NCBI/NLM/NIH

The purpose of this Study is to provide genomic DNA Illumina sequences from the reference chimpanzee (Clint) which will be used in a new assembly of this genome.

Run	Spots	Bases	Size	Published	Access Type
SRR490117	185.8 M	37.2 G	26.1 Gbp	2012-04-23	public

Experiment	Platform	Library Name	Strategy	Source	Selection	Layout
SRX142913	Illumina	clint1	WGS	GENOMIC	RANDOM	PAIRED

Biosample	Sample name	Title
SRS309553	Clint Chimp	Clint Chimp DNA sequencing

Bioproject	SRA Study	Title
	SRP012268	Chimp genomic DNA sequencing

Object
RunSRR490117	HTTP	FTP	Aspera
ExperimentSRX142913	HTTP	FTP	Aspera
StudySRP012268	HTTP	FTP	Aspera

Filter:

What does it do?: This button will lead you to the page where you can subset the data using "Filter" field and download the results in FASTQ or FASTA format.

What can the filter be applied to?

Sequence substring: one of the biological reads for a spot should contain the substring
Examples: ATTGGA, ^ATTGGA, ATTGGA$, ATGDNNAT, ATGGA&GCGC
The strings are case insensitive, and belong to either 2NA or 4NA alphabets.
String length limited to 29 characters in 4NA alphabet (includes IUPAC substitution codes) or 61 characters in 2NA alphabet (ACGT only). Search is case insensitive and strings may be combined with boolean operators & | ! (AND, OR, NOT)
See "SRA nucleotide search expressions" for more details.
Name of a spot you are looking for.
Example: EXWA4RL02G9Z6H
Name of sample pool member, or "all" for all members.
Example: M22_V2 will return all spots assigned to the sample pool member M22_V2 for run SRR031989.
Spot Id.
Example: 23

Run SRR490117 (Clint chimp DNA sequencing)

Intensity graph

	View: reads(customize)intensity graphsignals Hide base space color space show separated reads biological reads technical reads show quality scorewith bases show clipped show 4 channel quality scorewith bases
	Intensity graph