Run Browser : Browse : Sequence Read Archive : NCBI/NLM/NIH

The goal of this project is to identify rhesus macaque transcripts from NextGen sequences. Specifically,the Illumina platform was used to obtain mRNA sequences from several rhesus macaque tissues. These included brain, testis and thymus.

Run	Spots	Bases	Size	Published	Access Type
SRR353360	15.1 M	1.2 G	678.2 Mbp	2011-12-01	public

Experiment	Platform	Library Name	Strategy	Source	Selection	Layout
SRX101275	Illumina	RHESUS_BRAIN	RNA-Seq	TRANSCRIPTOMIC	cDNA	SINGLE

Biosample	Sample name	Title
SRS267139	RHESUS_MACAQUE_Brain_6	Rhesus macaque Animal Number (BF21178), Brain

Bioproject	SRA Study	Title
	SRP007299	de novo assembly of rhesus macaque transcripts from NextGen sequences

Object
RunSRR353360	HTTP	FTP	Aspera
ExperimentSRX101275	HTTP	FTP	Aspera
StudySRP007299	HTTP	FTP	Aspera

Filter:

What does it do?: This button will lead you to the page where you can subset the data using "Filter" field and download the results in FASTQ or FASTA format.

What can the filter be applied to?

Sequence substring: one of the biological reads for a spot should contain the substring
Examples: ATTGGA, ^ATTGGA, ATTGGA$, ATGDNNAT, ATGGA&GCGC
The strings are case insensitive, and belong to either 2NA or 4NA alphabets.
String length limited to 29 characters in 4NA alphabet (includes IUPAC substitution codes) or 61 characters in 2NA alphabet (ACGT only). Search is case insensitive and strings may be combined with boolean operators & | ! (AND, OR, NOT)
See "SRA nucleotide search expressions" for more details.
Name of a spot you are looking for.
Example: EXWA4RL02G9Z6H
Name of sample pool member, or "all" for all members.
Example: M22_V2 will return all spots assigned to the sample pool member M22_V2 for run SRR031989.
Spot Id.
Example: 23

Run SRR353360 (RHESUS_MACAQUE_MRNASEQ_Brain_6)

Intensity graph

	View: read(customize)intensity graphsignals Hide base space color space show separated reads biological reads technical reads show quality scorewith bases show clipped show 4 channel quality scorewith bases
	Intensity graph