Run Browser : Browse : Sequence Read Archive : NCBI/NLM/NIH

Run	Spots	Bases	Size	Published	Access Type
SRR254209	977,971	177.7 M	419.9 Mbp	2011-06-09	public

Experiment	Platform	Library Name	Strategy	Source	Selection	Layout
SRX072974	Ion Torrent	LB22692	WGS	GENOMIC	RANDOM	SINGLE

Biosample	Sample name	Title
SRS211779	E. coli O104:H4 LB22692	Escherichia coli O104:H4 str. LB226692

Bioproject	SRA Study	Title
PRJNA67613	SRP007080	Whole Genome Sequencing of Escherichia coli O104:H4 str. LB226692

Filter:

What does it do?: This button will lead you to the page where you can subset the data using "Filter" field and download the results in FASTQ or FASTA format.

Sequence substring: one of the biological reads for a spot should contain the substring
Examples: ATTGGA, ^ATTGGA, ATTGGA$, ATGDNNAT, ATGGA&GCGC
The strings are case insensitive, and belong to either 2NA or 4NA alphabets.
String length limited to 29 characters in 4NA alphabet (includes IUPAC substitution codes) or 61 characters in 2NA alphabet (ACGT only). Search is case insensitive and strings may be combined with boolean operators & | ! (AND, OR, NOT)
See "SRA nucleotide search expressions" for more details.
Name of a spot you are looking for.
Example: EXWA4RL02G9Z6H
Name of sample pool member, or "all" for all members.
Example: M22_V2 will return all spots assigned to the sample pool member M22_V2 for run SRR031989.
Spot Id.
Example: 23

Run SRR254209 (IonTorrent whole genome sequencing of Escherichia coli O104:H4 str. LB226692)

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